Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm42937-201ENSMUST00000197360 752 ntBASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Gm18711-201ENSMUST00000199341 750 ntBASIC11.01□□□□□ -0.65
Trim40Q3UWA4 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim40Q3UWA4 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm13142-201ENSMUST00000117213 1453 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm14005-209ENSMUST00000224993 1832 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm10646-201ENSMUST00000213227 3293 ntTSL 2 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm24934-201ENSMUST00000103764 111 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm9431-201ENSMUST00000119765 1051 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm13342-201ENSMUST00000121055 207 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm44711-201ENSMUST00000205414 1264 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm17931-201ENSMUST00000208132 634 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Trim40Q3UWA4 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Trim40Q3UWA4 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm29245-201ENSMUST00000187332 1416 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Trim40Q3UWA4 CT025681.1-201ENSMUST00000225453 1855 ntBASIC11□□□□□ -0.65
Trim40Q3UWA4 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 AC124433.1-202ENSMUST00000224762 1535 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Erich3-203ENSMUST00000189969 3460 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Gm15610-201ENSMUST00000120584 195 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Gm16177-201ENSMUST00000120728 718 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Rprl1-201ENSMUST00000158050 327 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Gm27682-201ENSMUST00000183930 110 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Gm38230-201ENSMUST00000193572 1159 ntBASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Trim40Q3UWA4 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms