Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Cux1P53564 Gm19246-201ENSMUST00000173599 255 ntBASIC17.79■□□□□ 0.44
Cux1P53564 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Cux1P53564 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Cux1P53564 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Cux1P53564 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Cux1P53564 Gm29164-201ENSMUST00000185454 1024 ntBASIC17.79■□□□□ 0.44
Cux1P53564 AC162932.1-201ENSMUST00000219209 872 ntBASIC17.79■□□□□ 0.44
Cux1P53564 AC158388.3-202ENSMUST00000225517 775 ntBASIC17.79■□□□□ 0.44
Cux1P53564 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Cib4-201ENSMUST00000065486 769 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Gm25580-201ENSMUST00000083409 327 ntBASIC17.79■□□□□ 0.44
Cux1P53564 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
Cux1P53564 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Cux1P53564 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Gm20633-201ENSMUST00000176742 2831 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Gm38194-201ENSMUST00000194529 2211 ntBASIC17.78■□□□□ 0.44
Cux1P53564 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Mir453-201ENSMUST00000104732 82 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Gm25998-201ENSMUST00000175397 53 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Gm26272-201ENSMUST00000179241 132 ntBASIC17.78■□□□□ 0.44
Cux1P53564 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 AC122024.3-201ENSMUST00000217719 294 ntBASIC17.78■□□□□ 0.44
Cux1P53564 AC138716.2-201ENSMUST00000226670 1016 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 AC164107.1-201ENSMUST00000227730 2161 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Cux1P53564 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Cux1P53564 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Cux1P53564 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC17.78■□□□□ 0.44
Cux1P53564 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC17.78■□□□□ 0.44
Cux1P53564 CT010447.1-201ENSMUST00000225657 1608 ntBASIC17.78■□□□□ 0.44
Cux1P53564 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cux1P53564 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Gm6831-202ENSMUST00000213025 1673 ntBASIC17.77■□□□□ 0.44
Cux1P53564 Gm14398-201ENSMUST00000117287 1073 ntBASIC17.77■□□□□ 0.44
Cux1P53564 Gm2448-201ENSMUST00000207080 559 ntBASIC17.77■□□□□ 0.44
Cux1P53564 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Gm9102-201ENSMUST00000219250 465 ntBASIC17.77■□□□□ 0.44
Cux1P53564 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC17.77■□□□□ 0.44
Cux1P53564 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Cux1P53564 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Cux1P53564 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Cux1P53564 Gm19680-201ENSMUST00000095050 1513 ntBASIC17.77■□□□□ 0.44
Cux1P53564 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cux1P53564 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Cux1P53564 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cux1P53564 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Cux1P53564 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Cux1P53564 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC17.77■□□□□ 0.43
Cux1P53564 Gm16547-201ENSMUST00000159474 293 ntBASIC17.77■□□□□ 0.43
Cux1P53564 Gm19013-201ENSMUST00000183895 1222 ntBASIC17.77■□□□□ 0.43
Cux1P53564 Gm19014-201ENSMUST00000184828 1189 ntBASIC17.77■□□□□ 0.43
Cux1P53564 Gm20781-201ENSMUST00000193154 693 ntBASIC17.77■□□□□ 0.43
Cux1P53564 Gm21736-201ENSMUST00000195399 693 ntBASIC17.77■□□□□ 0.43
Cux1P53564 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Cux1P53564 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Gm3836-201ENSMUST00000211377 1613 ntBASIC17.76■□□□□ 0.43
Cux1P53564 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Cux1P53564 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Cux1P53564 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Cux1P53564 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Cux1P53564 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Cux1P53564 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Cux1P53564 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms