Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Cog3-203ENSMUST00000227473 4197 ntBASIC9.41□□□□□ -0.9
Hoxd3P09027 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
Hoxd3P09027 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
Hoxd3P09027 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC9.41□□□□□ -0.9
Hoxd3P09027 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
Hoxd3P09027 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Hoxd3P09027 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm37960-201ENSMUST00000192402 1897 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm18300-201ENSMUST00000192792 1406 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 AC160966.1-202ENSMUST00000216860 1318 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm44942-201ENSMUST00000096093 2072 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm22133-201ENSMUST00000102082 109 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 4931428L18Rik-201ENSMUST00000127775 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Obox1-206ENSMUST00000181001 1217 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 4930440C22Rik-202ENSMUST00000190754 512 ntTSL 3 BASIC9.4□□□□□ -0.9
Hoxd3P09027 6030460B20Rik-201ENSMUST00000191764 1058 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm7003-201ENSMUST00000195089 312 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm37676-201ENSMUST00000195496 507 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm43646-201ENSMUST00000199962 464 ntTSL 3 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm6590-201ENSMUST00000203343 687 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 4833403J16Rik-201ENSMUST00000204490 1031 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC9.4□□□□□ -0.9
Hoxd3P09027 4930458B22Rik-201ENSMUST00000209339 754 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm45401-201ENSMUST00000209456 733 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm17827-201ENSMUST00000211825 742 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 CT571245.2-201ENSMUST00000218421 305 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm34165-201ENSMUST00000222012 1174 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Gm36525-201ENSMUST00000222590 638 ntTSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 AC154527.3-201ENSMUST00000225519 989 ntBASIC9.4□□□□□ -0.9
Hoxd3P09027 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Wfdc12-201ENSMUST00000051272 775 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Prl8a9-201ENSMUST00000006662 942 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Boll-201ENSMUST00000087585 882 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Ctdspl2-203ENSMUST00000110574 1616 ntAPPRIS P3 TSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Olfr183-204ENSMUST00000214831 1906 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Hoxd3P09027 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC9.4□□□□□ -0.9
Hoxd3P09027 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC9.4□□□□□ -0.91
Hoxd3P09027 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
Hoxd3P09027 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hoxd3P09027 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC9.4□□□□□ -0.91
Hoxd3P09027 Gm43149-201ENSMUST00000198162 1422 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm18782-201ENSMUST00000209023 1399 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm38055-201ENSMUST00000195353 2217 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms