Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim3Q9R1R2 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim3Q9R1R2 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trim3Q9R1R2 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 AC166359.1-201ENSMUST00000220243 1871 ntBASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm2260-201ENSMUST00000184965 657 ntBASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Trim3Q9R1R2 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Crry-ps-201ENSMUST00000079090 1309 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Rprl1-201ENSMUST00000158050 327 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms