Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.61□□□□□ -0.55
Lima1Q9ERG0 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm6013-201ENSMUST00000212264 699 ntBASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm10608-202ENSMUST00000213924 676 ntBASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 AC167022.1-201ENSMUST00000218647 1458 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm11531-201ENSMUST00000117614 555 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm4986-201ENSMUST00000119731 549 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm28882-201ENSMUST00000185504 314 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm43002-201ENSMUST00000200310 155 ntBASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Lima1Q9ERG0 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Lima1Q9ERG0 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms