Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Mir1943-201ENSMUST00000158276 73 ntBASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Gm7003-201ENSMUST00000195089 312 ntBASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Gm10076-201ENSMUST00000073238 384 ntBASIC13.22□□□□□ -0.29
Smc1aQ9CU62 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Smc1aQ9CU62 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gm42913-201ENSMUST00000197936 1853 ntBASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Gm39404-201ENSMUST00000216350 313 ntBASIC13.21□□□□□ -0.29
Smc1aQ9CU62 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 CT009718.3-201ENSMUST00000221116 367 ntBASIC13.21□□□□□ -0.29
Smc1aQ9CU62 AC131330.1-201ENSMUST00000227814 1015 ntBASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Smc1aQ9CU62 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Gm43172-201ENSMUST00000202139 2137 ntBASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Smc1aQ9CU62 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Smc1aQ9CU62 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms