Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.44□□□□□ -0.58
Usp39Q3TIX9 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 AC123857.2-201ENSMUST00000225756 1582 ntBASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usp39Q3TIX9 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm5419-201ENSMUST00000119301 527 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm7722-201ENSMUST00000120646 741 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm27341-201ENSMUST00000183570 106 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm2260-201ENSMUST00000184965 657 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 AC154252.2-201ENSMUST00000223593 767 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.43□□□□□ -0.58
Usp39Q3TIX9 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gm8862-201ENSMUST00000198379 1346 ntBASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gm14441-201ENSMUST00000121960 540 ntBASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gm18893-201ENSMUST00000198416 943 ntBASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.42□□□□□ -0.58
Usp39Q3TIX9 Gm44967-201ENSMUST00000207047 631 ntBASIC11.42□□□□□ -0.58
Usp39Q3TIX9 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms