Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Espl1-201ENSMUST00000064924 6630 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Pzp-201ENSMUST00000112132 4681 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Tbck-202ENSMUST00000169172 6578 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
Hmgb3O54879 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Hmgb3O54879 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm11803-201ENSMUST00000119966 444 ntBASIC9.71□□□□□ -0.86
Hmgb3O54879 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm10156-201ENSMUST00000122364 462 ntBASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm27331-201ENSMUST00000183705 60 ntBASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm18304-201ENSMUST00000189162 546 ntBASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm9136-201ENSMUST00000193368 454 ntBASIC9.71□□□□□ -0.86
Hmgb3O54879 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC9.71□□□□□ -0.86
Hmgb3O54879 AC153974.2-201ENSMUST00000218577 1025 ntBASIC9.71□□□□□ -0.86
Hmgb3O54879 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Zkscan1-202ENSMUST00000066617 8042 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC9.71□□□□□ -0.86
Hmgb3O54879 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
Hmgb3O54879 Gm17244-201ENSMUST00000192482 3416 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Lrrk2-201ENSMUST00000060642 8275 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm8522-201ENSMUST00000118416 1929 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm43963-201ENSMUST00000203466 2488 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm37497-201ENSMUST00000195830 798 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm4768-201ENSMUST00000206199 686 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC9.7□□□□□ -0.86
Hmgb3O54879 AC155252.1-201ENSMUST00000226462 1208 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Naa25-201ENSMUST00000042163 5447 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Ep400-203ENSMUST00000112435 10420 ntTSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Nrp2-205ENSMUST00000114155 6534 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 141.6 ms