Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Smarca1Q6PGB8 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Smarca1Q6PGB8 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Smarca1Q6PGB8 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Smarca1Q6PGB8 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Smarca1Q6PGB8 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC22.88■■□□□ 1.25
Smarca1Q6PGB8 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Smarca1Q6PGB8 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
Smarca1Q6PGB8 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC22.88■■□□□ 1.25
Smarca1Q6PGB8 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Smarca1Q6PGB8 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Smarca1Q6PGB8 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Smarca1Q6PGB8 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Smarca1Q6PGB8 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
Smarca1Q6PGB8 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC22.83■■□□□ 1.25
Smarca1Q6PGB8 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
Smarca1Q6PGB8 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Gm5913-201ENSMUST00000119397 1399 ntBASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smarca1Q6PGB8 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Smarca1Q6PGB8 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Smarca1Q6PGB8 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Smarca1Q6PGB8 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Smarca1Q6PGB8 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smarca1Q6PGB8 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Smarca1Q6PGB8 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Smarca1Q6PGB8 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC22.79■■□□□ 1.24
Smarca1Q6PGB8 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Smarca1Q6PGB8 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.79■■□□□ 1.24
Smarca1Q6PGB8 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Smarca1Q6PGB8 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Smarca1Q6PGB8 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
Smarca1Q6PGB8 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Smarca1Q6PGB8 Gm12922-201ENSMUST00000120626 809 ntBASIC22.78■■□□□ 1.24
Smarca1Q6PGB8 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Smarca1Q6PGB8 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC22.78■■□□□ 1.24
Smarca1Q6PGB8 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Gm9847-201ENSMUST00000052528 599 ntBASIC22.77■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 98.4 ms