Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
ShhQ62226 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ShhQ62226 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.06■□□□□ 0.64
ShhQ62226 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ShhQ62226 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
ShhQ62226 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
ShhQ62226 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ShhQ62226 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.06■□□□□ 0.64
ShhQ62226 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ShhQ62226 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ShhQ62226 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.05■□□□□ 0.64
ShhQ62226 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ShhQ62226 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ShhQ62226 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ShhQ62226 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
ShhQ62226 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ShhQ62226 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
ShhQ62226 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ShhQ62226 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.04■□□□□ 0.64
ShhQ62226 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.04■□□□□ 0.64
ShhQ62226 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
ShhQ62226 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ShhQ62226 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.04■□□□□ 0.64
ShhQ62226 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ShhQ62226 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ShhQ62226 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ShhQ62226 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ShhQ62226 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ShhQ62226 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.03■□□□□ 0.64
ShhQ62226 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.03■□□□□ 0.64
ShhQ62226 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
ShhQ62226 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ShhQ62226 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ShhQ62226 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
ShhQ62226 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ShhQ62226 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
ShhQ62226 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
ShhQ62226 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
ShhQ62226 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ShhQ62226 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ShhQ62226 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.02■□□□□ 0.64
ShhQ62226 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ShhQ62226 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
ShhQ62226 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.64
ShhQ62226 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
ShhQ62226 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
ShhQ62226 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.01■□□□□ 0.63
ShhQ62226 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
ShhQ62226 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.01■□□□□ 0.63
ShhQ62226 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.01■□□□□ 0.63
ShhQ62226 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.01■□□□□ 0.63
ShhQ62226 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ShhQ62226 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.01■□□□□ 0.63
ShhQ62226 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ShhQ62226 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
ShhQ62226 Gm11847-201ENSMUST00000125165 1119 ntBASIC19■□□□□ 0.63
ShhQ62226 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
ShhQ62226 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
ShhQ62226 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
ShhQ62226 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
ShhQ62226 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19■□□□□ 0.63
ShhQ62226 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19■□□□□ 0.63
ShhQ62226 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ShhQ62226 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.99■□□□□ 0.63
ShhQ62226 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
ShhQ62226 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ShhQ62226 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ShhQ62226 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.99■□□□□ 0.63
ShhQ62226 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ShhQ62226 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ShhQ62226 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ShhQ62226 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ShhQ62226 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.98■□□□□ 0.63
ShhQ62226 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.98■□□□□ 0.63
ShhQ62226 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ShhQ62226 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC18.98■□□□□ 0.63
ShhQ62226 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.97■□□□□ 0.63
ShhQ62226 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
ShhQ62226 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ShhQ62226 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ShhQ62226 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ShhQ62226 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
ShhQ62226 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ShhQ62226 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms