Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Col8a1Q00780 Gm6903-201ENSMUST00000160509 1366 ntBASIC10.12□□□□□ -0.79
Col8a1Q00780 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Col8a1Q00780 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Col8a1Q00780 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Col8a1Q00780 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Col8a1Q00780 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Col8a1Q00780 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Col8a1Q00780 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Col8a1Q00780 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC10.11□□□□□ -0.79
Col8a1Q00780 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.79
Col8a1Q00780 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC10.11□□□□□ -0.79
Col8a1Q00780 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC10.11□□□□□ -0.79
Col8a1Q00780 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Mir181d-201ENSMUST00000102383 72 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm24791-201ENSMUST00000104284 131 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm23119-201ENSMUST00000158610 140 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm9135-201ENSMUST00000182963 990 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm44647-201ENSMUST00000207402 428 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC10.11□□□□□ -0.79
Col8a1Q00780 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm5705-201ENSMUST00000066241 711 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm23680-201ENSMUST00000083162 164 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm45743-201ENSMUST00000212701 2795 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm43267-201ENSMUST00000199664 1796 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 AC166836.1-201ENSMUST00000219933 1795 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Gm37472-201ENSMUST00000192342 4052 ntBASIC10.11□□□□□ -0.79
Col8a1Q00780 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Col8a1Q00780 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC10.1□□□□□ -0.79
Col8a1Q00780 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Col8a1Q00780 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm6630-201ENSMUST00000119199 454 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm13019-201ENSMUST00000120000 276 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm22146-201ENSMUST00000157397 288 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
Col8a1Q00780 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm29499-201ENSMUST00000189151 486 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm28329-201ENSMUST00000191208 689 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm29171-201ENSMUST00000191397 486 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm37102-201ENSMUST00000195740 1105 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 Gm44882-201ENSMUST00000205702 802 ntBASIC10.1□□□□□ -0.79
Col8a1Q00780 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC10.1□□□□□ -0.79
Col8a1Q00780 AC154361.2-201ENSMUST00000224747 943 ntBASIC10.1□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms