Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Lig3P97386 Gm4607-201ENSMUST00000206649 577 ntBASIC12.97□□□□□ -0.33
Lig3P97386 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.97□□□□□ -0.33
Lig3P97386 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.97□□□□□ -0.33
Lig3P97386 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Lig3P97386 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Lig3P97386 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lig3P97386 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.97□□□□□ -0.33
Lig3P97386 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.96□□□□□ -0.33
Lig3P97386 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
Lig3P97386 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Lig3P97386 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
Lig3P97386 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.96□□□□□ -0.33
Lig3P97386 Gm23251-201ENSMUST00000103773 110 ntBASIC12.96□□□□□ -0.33
Lig3P97386 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC12.96□□□□□ -0.33
Lig3P97386 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC12.96□□□□□ -0.33
Lig3P97386 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC12.96□□□□□ -0.33
Lig3P97386 AC159205.5-202ENSMUST00000224849 386 ntBASIC12.96□□□□□ -0.33
Lig3P97386 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Lig3P97386 Gm38273-201ENSMUST00000194987 2382 ntBASIC12.96□□□□□ -0.33
Lig3P97386 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Lig3P97386 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Lig3P97386 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lig3P97386 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lig3P97386 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lig3P97386 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Lig3P97386 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lig3P97386 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Lig3P97386 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.96□□□□□ -0.34
Lig3P97386 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Lig3P97386 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Gm7666-201ENSMUST00000146631 819 ntBASIC12.95□□□□□ -0.34
Lig3P97386 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.95□□□□□ -0.34
Lig3P97386 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.95□□□□□ -0.34
Lig3P97386 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC12.95□□□□□ -0.34
Lig3P97386 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Gm9358-201ENSMUST00000183067 927 ntBASIC12.95□□□□□ -0.34
Lig3P97386 Gm28882-201ENSMUST00000185504 314 ntBASIC12.95□□□□□ -0.34
Lig3P97386 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC12.95□□□□□ -0.34
Lig3P97386 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC12.95□□□□□ -0.34
Lig3P97386 Gm19287-201ENSMUST00000203190 358 ntBASIC12.95□□□□□ -0.34
Lig3P97386 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Lig3P97386 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Lig3P97386 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Lig3P97386 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 AC166359.1-201ENSMUST00000220243 1871 ntBASIC12.95□□□□□ -0.34
Lig3P97386 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms