Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
RaraP11416 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
RaraP11416 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
RaraP11416 Gm11511-201ENSMUST00000118146 540 ntBASIC12.74□□□□□ -0.37
RaraP11416 Gm15004-201ENSMUST00000119192 630 ntBASIC12.74□□□□□ -0.37
RaraP11416 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC12.74□□□□□ -0.37
RaraP11416 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Gm19287-201ENSMUST00000203190 358 ntBASIC12.74□□□□□ -0.37
RaraP11416 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.74□□□□□ -0.37
RaraP11416 Gm9368-201ENSMUST00000219348 831 ntBASIC12.74□□□□□ -0.37
RaraP11416 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Gm10254-201ENSMUST00000052888 867 ntBASIC12.74□□□□□ -0.37
RaraP11416 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC12.74□□□□□ -0.37
RaraP11416 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RaraP11416 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC12.73□□□□□ -0.37
RaraP11416 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Gm8862-201ENSMUST00000198379 1346 ntBASIC12.73□□□□□ -0.37
RaraP11416 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.73□□□□□ -0.37
RaraP11416 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.73□□□□□ -0.37
RaraP11416 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
RaraP11416 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Gm14109-201ENSMUST00000118814 309 ntBASIC12.73□□□□□ -0.37
RaraP11416 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC12.73□□□□□ -0.37
RaraP11416 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12.73□□□□□ -0.37
RaraP11416 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.73□□□□□ -0.37
RaraP11416 Gm8956-201ENSMUST00000203939 825 ntBASIC12.73□□□□□ -0.37
RaraP11416 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.73□□□□□ -0.37
RaraP11416 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
RaraP11416 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
RaraP11416 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.72□□□□□ -0.37
RaraP11416 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
RaraP11416 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
RaraP11416 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
RaraP11416 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.72□□□□□ -0.37
RaraP11416 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
RaraP11416 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.72□□□□□ -0.37
RaraP11416 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
RaraP11416 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RaraP11416 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.72□□□□□ -0.37
RaraP11416 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms