Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm12203-201ENSMUST00000118235 598 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm13612-201ENSMUST00000119276 390 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm12209-201ENSMUST00000120089 596 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm11964-201ENSMUST00000120982 444 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC9.73□□□□□ -0.85
Hmgb3O54879 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm20949-201ENSMUST00000206478 952 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm19163-201ENSMUST00000223313 780 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Wdyhv1-203ENSMUST00000226889 394 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 AC108416.1-202ENSMUST00000228927 1201 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Tdrd1-202ENSMUST00000111604 5187 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm43760-201ENSMUST00000202120 3015 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Gm13135-201ENSMUST00000117628 3121 ntBASIC9.73□□□□□ -0.85
Hmgb3O54879 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Eya3-201ENSMUST00000020197 4976 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Mindy4-201ENSMUST00000053094 4270 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Cacna1d-204ENSMUST00000223803 6435 ntAPPRIS ALT2 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Myo1c-203ENSMUST00000102505 4652 ntAPPRIS ALT1 TSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hmgb3O54879 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC9.73□□□□□ -0.85
Hmgb3O54879 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm20045-201ENSMUST00000192658 5577 ntBASIC9.72□□□□□ -0.85
Hmgb3O54879 Gnl3l-201ENSMUST00000026297 4865 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm37827-201ENSMUST00000194486 1542 ntBASIC9.72□□□□□ -0.85
Hmgb3O54879 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm13315-201ENSMUST00000120376 991 ntBASIC9.72□□□□□ -0.85
Hmgb3O54879 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
Hmgb3O54879 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm8463-201ENSMUST00000208573 613 ntBASIC9.72□□□□□ -0.85
Hmgb3O54879 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Dhrs4-202ENSMUST00000226168 828 ntBASIC9.72□□□□□ -0.85
Hmgb3O54879 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Erich3-203ENSMUST00000189969 3460 ntBASIC9.72□□□□□ -0.85
Hmgb3O54879 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 G3bp1-201ENSMUST00000018727 6703 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Zzef1-208ENSMUST00000207107 11306 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hmgb3O54879 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Ppfia2-201ENSMUST00000029404 5429 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hmgb3O54879 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 240.2 ms