Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx56Q9D0R4 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx56Q9D0R4 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Gm18986-201ENSMUST00000216029 1986 ntBASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Gm12201-201ENSMUST00000120657 1234 ntBASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx56Q9D0R4 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm11960-201ENSMUST00000122068 925 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm37666-201ENSMUST00000194110 866 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm43184-201ENSMUST00000197247 542 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gm3836-201ENSMUST00000211377 1613 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Sgcz-201ENSMUST00000118896 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 AC122881.1-201ENSMUST00000225757 2695 ntBASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Ddx56Q9D0R4 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms