Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm8723-201ENSMUST00000166076 820 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm8701-201ENSMUST00000169259 874 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm7741-201ENSMUST00000181445 989 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm18041-201ENSMUST00000218210 618 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 AC154361.2-201ENSMUST00000224747 943 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 AC154572.1-201ENSMUST00000226098 1204 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Gm16380-201ENSMUST00000077997 478 ntBASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Snrnp40Q6PE01 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Snrnp40Q6PE01 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Snrnp40Q6PE01 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Snrnp40Q6PE01 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.75
Snrnp40Q6PE01 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm15036-201ENSMUST00000118880 400 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm22379-201ENSMUST00000157480 131 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm26989-201ENSMUST00000182608 749 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm7504-201ENSMUST00000201449 424 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm8436-201ENSMUST00000210152 1080 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm5749-201ENSMUST00000210673 1090 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 AC153929.1-201ENSMUST00000219009 303 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 AC122346.3-201ENSMUST00000223983 306 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 AC118639.2-201ENSMUST00000226289 223 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm44056-201ENSMUST00000204623 1427 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Gm44414-201ENSMUST00000203660 2109 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Kcnk16-202ENSMUST00000225596 2127 ntBASIC10.39□□□□□ -0.75
Snrnp40Q6PE01 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC10.39□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms