Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Usp39Q3TIX9 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Gm25214-201ENSMUST00000104573 129 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Gm43984-201ENSMUST00000204572 2864 ntBASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Usp39Q3TIX9 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm4864-201ENSMUST00000219894 1461 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm15610-201ENSMUST00000120584 195 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm14277-201ENSMUST00000121195 360 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm12164-201ENSMUST00000121695 551 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm15276-201ENSMUST00000145953 498 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Usp39Q3TIX9 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Usp39Q3TIX9 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms