Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC11.32□□□□□ -0.6
Lire1P11260 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Gm17208-201ENSMUST00000168388 535 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Gm8738-201ENSMUST00000172606 329 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.32□□□□□ -0.6
Lire1P11260 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Gm37986-201ENSMUST00000193285 383 ntBASIC11.32□□□□□ -0.6
Lire1P11260 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.32□□□□□ -0.6
Lire1P11260 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.32□□□□□ -0.6
Lire1P11260 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Lire1P11260 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
Lire1P11260 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Gm43289-201ENSMUST00000200537 1475 ntBASIC11.32□□□□□ -0.6
Lire1P11260 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Lire1P11260 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Slc14a2-201ENSMUST00000025434 2793 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Gm4909-201ENSMUST00000118749 794 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Gm13316-201ENSMUST00000140537 691 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Gm15276-201ENSMUST00000145953 498 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Lire1P11260 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Lire1P11260 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Lire1P11260 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC11.31□□□□□ -0.6
Lire1P11260 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.31□□□□□ -0.6
Lire1P11260 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Gm19208-201ENSMUST00000213861 912 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.31□□□□□ -0.6
Lire1P11260 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Lire1P11260 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.31□□□□□ -0.6
Lire1P11260 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Lire1P11260 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Lire1P11260 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.31□□□□□ -0.6
Lire1P11260 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Lire1P11260 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Tank-203ENSMUST00000112495 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lire1P11260 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms