Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC16.63■□□□□ 0.25
Usp47Q8BY87 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gm11246-201ENSMUST00000120880 345 ntBASIC16.63■□□□□ 0.25
Usp47Q8BY87 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gm26047-201ENSMUST00000157308 113 ntBASIC16.63■□□□□ 0.25
Usp47Q8BY87 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Usp47Q8BY87 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gm26047-202ENSMUST00000198840 115 ntBASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gm8574-201ENSMUST00000203207 924 ntBASIC16.63■□□□□ 0.25
Usp47Q8BY87 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp47Q8BY87 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm18642-201ENSMUST00000206642 1400 ntBASIC16.62■□□□□ 0.25
Usp47Q8BY87 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm14314-201ENSMUST00000118225 1015 ntBASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm11500-201ENSMUST00000118237 601 ntBASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm15374-201ENSMUST00000119313 844 ntBASIC16.62■□□□□ 0.25
Usp47Q8BY87 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Usp47Q8BY87 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC16.61■□□□□ 0.25
Usp47Q8BY87 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Gm37299-201ENSMUST00000193951 826 ntBASIC16.61■□□□□ 0.25
Usp47Q8BY87 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp47Q8BY87 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms