Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Adar-204ENSMUST00000118341 2399 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Smpd4-219ENSMUST00000170366 2256 ntTSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Zkscan6-201ENSMUST00000018491 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 AC160562.2-201ENSMUST00000216374 2201 ntTSL 2 BASIC11.34□□□□□ -0.59
Lire1P11260 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.34□□□□□ -0.59
Lire1P11260 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Gm16505-201ENSMUST00000179981 232 ntBASIC11.34□□□□□ -0.59
Lire1P11260 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC11.34□□□□□ -0.59
Lire1P11260 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC11.34□□□□□ -0.59
Lire1P11260 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Slc22a13-201ENSMUST00000084797 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.34□□□□□ -0.59
Lire1P11260 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Rasgrp4-212ENSMUST00000204194 2993 ntTSL 5 BASIC11.34□□□□□ -0.59
Lire1P11260 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Txnrd1-201ENSMUST00000020484 3325 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lire1P11260 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Lire1P11260 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Lire1P11260 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC11.33□□□□□ -0.6
Lire1P11260 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Olfr315-202ENSMUST00000203256 2458 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Lire1P11260 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.33□□□□□ -0.6
Lire1P11260 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gm38192-201ENSMUST00000194364 1847 ntBASIC11.33□□□□□ -0.6
Lire1P11260 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.33□□□□□ -0.6
Lire1P11260 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.33□□□□□ -0.6
Lire1P11260 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC11.33□□□□□ -0.6
Lire1P11260 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.33□□□□□ -0.6
Lire1P11260 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
Lire1P11260 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gm30285-201ENSMUST00000214614 422 ntBASIC11.33□□□□□ -0.6
Lire1P11260 AC155637.1-201ENSMUST00000218560 636 ntBASIC11.33□□□□□ -0.6
Lire1P11260 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Lire1P11260 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Lire1P11260 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Supt16-201ENSMUST00000046709 4673 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Lire1P11260 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gm26848-201ENSMUST00000181052 2467 ntTSL 5 BASIC11.33□□□□□ -0.6
Lire1P11260 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC11.33□□□□□ -0.6
Lire1P11260 Adh6-ps1-201ENSMUST00000171054 2789 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lire1P11260 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lire1P11260 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Lire1P11260 Sap18-204ENSMUST00000128764 5125 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms