Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Gm15207-201ENSMUST00000119259 442 ntBASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Gm17040-202ENSMUST00000170597 889 ntBASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 AU022133-201ENSMUST00000200601 873 ntBASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Gm1840-201ENSMUST00000051687 1432 ntBASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Atg4aQ8C9S8 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm28450-201ENSMUST00000187349 638 ntBASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Gm45113-201ENSMUST00000207518 165 ntBASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Atg4aQ8C9S8 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Paupar-201ENSMUST00000194826 3482 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm13910-201ENSMUST00000121752 1428 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm11663-201ENSMUST00000117888 290 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm14277-201ENSMUST00000121195 360 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm5714-201ENSMUST00000197343 566 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm43002-201ENSMUST00000200310 155 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm45575-201ENSMUST00000210283 548 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 CT025694.1-201ENSMUST00000226188 934 ntBASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Atg4aQ8C9S8 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms