Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Gm28324-201ENSMUST00000187913 264 ntBASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Gm42518-201ENSMUST00000196277 938 ntBASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 CT025553.1-201ENSMUST00000226292 299 ntBASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 CT009757.3-201ENSMUST00000223367 2320 ntBASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm37028-201ENSMUST00000194276 107 ntBASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm38314-201ENSMUST00000195709 625 ntBASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm17825-201ENSMUST00000206836 794 ntBASIC16.19■□□□□ 0.18
Usp40Q8BWR4 AC124433.1-201ENSMUST00000224483 1063 ntBASIC16.19■□□□□ 0.18
Usp40Q8BWR4 AC102368.1-201ENSMUST00000227161 892 ntBASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Gm10305-201ENSMUST00000195331 2475 ntBASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usp40Q8BWR4 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Zfp125-201ENSMUST00000079237 2488 ntBASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Gm20554-201ENSMUST00000177421 2352 ntBASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 n-R5s84-201ENSMUST00000122591 109 ntBASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 CT573047.1-201ENSMUST00000223652 851 ntBASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Usp40Q8BWR4 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms