Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm44414-201ENSMUST00000203660 2109 ntBASIC20.68■□□□□ 0.9
Trim41Q5NCC3 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim41Q5NCC3 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim41Q5NCC3 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim41Q5NCC3 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Gm9796-201ENSMUST00000062249 2250 ntBASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Gm15725-201ENSMUST00000119947 1090 ntBASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Gm44056-201ENSMUST00000204623 1427 ntBASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim41Q5NCC3 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm12712-201ENSMUST00000120676 801 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm24844-201ENSMUST00000158679 127 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm21092-201ENSMUST00000178995 955 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm29808-201ENSMUST00000194419 468 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 AC166344.1-201ENSMUST00000223745 674 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 AC115122.1-201ENSMUST00000224850 1040 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm38344-201ENSMUST00000195306 1353 ntBASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gnat3-201ENSMUST00000030561 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim41Q5NCC3 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Ntrk2-204ENSMUST00000224259 3049 ntBASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 2810403D21Rik-207ENSMUST00000152089 852 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Gm22993-201ENSMUST00000175423 254 ntBASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Gm4654-201ENSMUST00000183305 982 ntBASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Ighv5-11-201ENSMUST00000193354 371 ntBASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Gm43969-201ENSMUST00000204833 535 ntBASIC20.65■□□□□ 0.9
Trim41Q5NCC3 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim41Q5NCC3 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Trim41Q5NCC3 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim41Q5NCC3 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim41Q5NCC3 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim41Q5NCC3 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim41Q5NCC3 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Trim41Q5NCC3 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Gm14234-201ENSMUST00000119539 845 ntBASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Gm11836-201ENSMUST00000121022 441 ntBASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Gm43037-201ENSMUST00000196808 250 ntBASIC20.64■□□□□ 0.89
Trim41Q5NCC3 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms