Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Rnf40Q3U319 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm13689-201ENSMUST00000119360 685 ntBASIC12.54□□□□□ -0.4
Rnf40Q3U319 2700069I18Rik-201ENSMUST00000128815 1020 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm11588-201ENSMUST00000141758 658 ntTSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm12278-201ENSMUST00000153718 407 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm7247-201ENSMUST00000162998 1157 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Vmn1r169-201ENSMUST00000170290 915 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm2087-201ENSMUST00000188217 366 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.54□□□□□ -0.4
Rnf40Q3U319 Zfp799-202ENSMUST00000201499 651 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm44415-201ENSMUST00000204151 2112 ntBASIC12.54□□□□□ -0.4
Rnf40Q3U319 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm17611-202ENSMUST00000220613 814 ntBASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm6888-201ENSMUST00000221983 706 ntBASIC12.54□□□□□ -0.4
Rnf40Q3U319 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Elk3-204ENSMUST00000151153 1336 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Rnf40Q3U319 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.54□□□□□ -0.4
Rnf40Q3U319 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm13616-201ENSMUST00000120600 222 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm22693-201ENSMUST00000175049 442 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 2810049E08Rik-201ENSMUST00000185600 1102 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 AC140397.2-201ENSMUST00000224213 834 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm8396-201ENSMUST00000057361 823 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm42736-201ENSMUST00000200723 1353 ntBASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms