Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm20121-201ENSMUST00000198547 1594 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm10375-201ENSMUST00000100692 836 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm10377-201ENSMUST00000100695 899 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm3543-201ENSMUST00000111870 899 ntAPPRIS P1 TSL 3 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm11989-201ENSMUST00000117240 672 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm11362-201ENSMUST00000118838 850 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm11877-201ENSMUST00000118921 852 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC9.47□□□□□ -0.89
Hoxd3P09027 1700001F09Rik-201ENSMUST00000178178 884 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 1700003H04Rik-203ENSMUST00000178485 761 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm29615-201ENSMUST00000185371 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28224-201ENSMUST00000186078 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm29001-201ENSMUST00000186177 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm29043-201ENSMUST00000186371 623 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28292-201ENSMUST00000186593 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28195-201ENSMUST00000186992 372 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28101-201ENSMUST00000187608 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm29076-201ENSMUST00000187689 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28302-201ENSMUST00000187931 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28646-201ENSMUST00000188220 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28205-201ENSMUST00000189177 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm29032-201ENSMUST00000189797 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm28695-201ENSMUST00000190300 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Ighv5-7-201ENSMUST00000192302 244 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm37448-201ENSMUST00000192795 697 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm31925-201ENSMUST00000193561 600 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm37490-201ENSMUST00000195566 724 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm43068-201ENSMUST00000201095 1273 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm45733-201ENSMUST00000212988 437 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 CT025526.1-201ENSMUST00000217327 267 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 AC155637.1-201ENSMUST00000218560 636 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 AC152414.2-201ENSMUST00000219620 537 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 AC116589.9-201ENSMUST00000221462 908 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 AC122924.1-201ENSMUST00000222044 163 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 AC161453.1-201ENSMUST00000226078 884 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Med21-201ENSMUST00000032429 814 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Fam53a-203ENSMUST00000065162 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm44509-201ENSMUST00000205400 1324 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm45885-202ENSMUST00000211520 1383 ntBASIC9.47□□□□□ -0.89
Hoxd3P09027 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Gm31218-201ENSMUST00000221181 1498 ntTSL 5 BASIC9.47□□□□□ -0.89
Hoxd3P09027 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hoxd3P09027 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 AC126262.1-201ENSMUST00000221802 1904 ntBASIC9.46□□□□□ -0.89
Hoxd3P09027 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms