Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Cux1P53564 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
Cux1P53564 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Cux1P53564 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC17.98■□□□□ 0.47
Cux1P53564 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Gm7902-201ENSMUST00000198842 947 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Gm44216-201ENSMUST00000203942 157 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Gm18499-201ENSMUST00000220808 1021 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC17.97■□□□□ 0.47
Cux1P53564 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Cux1P53564 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Cux1P53564 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Cux1P53564 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC17.97■□□□□ 0.47
Cux1P53564 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Cux1P53564 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Cux1P53564 Gm24328-201ENSMUST00000175104 67 ntBASIC17.97■□□□□ 0.47
Cux1P53564 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC17.97■□□□□ 0.47
Cux1P53564 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC17.97■□□□□ 0.47
Cux1P53564 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 AC122891.1-201ENSMUST00000218671 268 ntBASIC17.97■□□□□ 0.47
Cux1P53564 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cux1P53564 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 AC125108.1-201ENSMUST00000218986 2330 ntBASIC17.96■□□□□ 0.47
Cux1P53564 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Gm27194-201ENSMUST00000175753 2936 ntBASIC17.96■□□□□ 0.47
Cux1P53564 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Gm11700-201ENSMUST00000119409 403 ntBASIC17.96■□□□□ 0.47
Cux1P53564 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Gm5342-201ENSMUST00000181982 1003 ntBASIC17.96■□□□□ 0.47
Cux1P53564 Gm5870-201ENSMUST00000196461 282 ntBASIC17.96■□□□□ 0.47
Cux1P53564 Gm43778-201ENSMUST00000199438 199 ntBASIC17.96■□□□□ 0.47
Cux1P53564 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Gm45856-201ENSMUST00000212752 416 ntBASIC17.96■□□□□ 0.47
Cux1P53564 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Cux1P53564 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Cux1P53564 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cux1P53564 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Cux1P53564 Gm5308-201ENSMUST00000196752 1354 ntBASIC17.96■□□□□ 0.46
Cux1P53564 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
Cux1P53564 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC17.95■□□□□ 0.46
Cux1P53564 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC17.95■□□□□ 0.46
Cux1P53564 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Gm4982-201ENSMUST00000160440 1098 ntBASIC17.95■□□□□ 0.46
Cux1P53564 Gas5-224ENSMUST00000162558 502 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Gm9487-201ENSMUST00000216600 472 ntBASIC17.95■□□□□ 0.46
Cux1P53564 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC17.95■□□□□ 0.46
Cux1P53564 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC17.95■□□□□ 0.46
Cux1P53564 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Cux1P53564 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cux1P53564 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC17.95■□□□□ 0.46
Cux1P53564 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms