Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 CT025624.1-201ENSMUST00000224007 2700 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm22594-201ENSMUST00000104251 130 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Mir7051-201ENSMUST00000184167 73 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 AC122346.3-201ENSMUST00000223983 306 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 CT009527.1-201ENSMUST00000224205 339 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm23680-201ENSMUST00000083162 164 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Scn11aQ9R053 Gm21759-201ENSMUST00000178345 1828 ntBASIC13.9□□□□□ -0.18
Scn11aQ9R053 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Scn11aQ9R053 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm6655-201ENSMUST00000201932 1309 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm8723-201ENSMUST00000166076 820 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm8701-201ENSMUST00000169259 874 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm37826-201ENSMUST00000195329 322 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm10263-201ENSMUST00000085163 300 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm45416-201ENSMUST00000209713 2201 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Rab3c-202ENSMUST00000223922 2398 ntBASIC13.89□□□□□ -0.19
Scn11aQ9R053 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Scn11aQ9R053 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm24992-201ENSMUST00000157412 130 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm18776-201ENSMUST00000188833 654 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm3726-201ENSMUST00000203110 785 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Mir744-201ENSMUST00000103261 100 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm24791-201ENSMUST00000104284 131 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 AC140409.3-201ENSMUST00000215601 358 ntTSL 3 BASIC13.88□□□□□ -0.19
Scn11aQ9R053 AC122891.1-201ENSMUST00000218671 268 ntBASIC13.88□□□□□ -0.19
Scn11aQ9R053 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms