Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm5257-201ENSMUST00000121823 790 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm7741-201ENSMUST00000181445 989 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm43163-201ENSMUST00000196571 442 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm18204-201ENSMUST00000209835 793 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm39288-201ENSMUST00000210554 446 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 AC134869.4-202ENSMUST00000224350 837 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 AC154572.1-201ENSMUST00000226098 1204 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx55Q6ZPL9 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm14395-201ENSMUST00000120494 563 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm43380-201ENSMUST00000200421 220 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm17825-201ENSMUST00000206836 794 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm45500-201ENSMUST00000211676 803 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm19046-201ENSMUST00000221263 1298 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm4978-201ENSMUST00000071565 801 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx55Q6ZPL9 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm18642-201ENSMUST00000206642 1400 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm12274-201ENSMUST00000120062 385 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm22146-201ENSMUST00000157397 288 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm25554-201ENSMUST00000158075 113 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm18201-201ENSMUST00000174735 875 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm6114-201ENSMUST00000182472 968 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Ddx55Q6ZPL9 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 69.6 ms