Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb1P63158 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb1P63158 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb1P63158 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Hmgb1P63158 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb1P63158 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Hmgb1P63158 Gm5380-201ENSMUST00000119296 2136 ntBASIC13.15□□□□□ -0.3
Hmgb1P63158 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Hmgb1P63158 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Hmgb1P63158 Gm38194-201ENSMUST00000194529 2211 ntBASIC13.15□□□□□ -0.31
Hmgb1P63158 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Hmgb1P63158 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Hmgb1P63158 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 AC126257.1-201ENSMUST00000213195 1536 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC13.14□□□□□ -0.31
Hmgb1P63158 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
Hmgb1P63158 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Hmgb1P63158 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm12015-201ENSMUST00000117065 843 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm11222-201ENSMUST00000119005 738 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC13.14□□□□□ -0.31
Hmgb1P63158 AY702102-202ENSMUST00000194651 1173 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm36987-201ENSMUST00000194704 2979 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Olfr284-202ENSMUST00000206647 966 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.14□□□□□ -0.31
Hmgb1P63158 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Hmgb1P63158 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC13.14□□□□□ -0.31
Hmgb1P63158 Gm11685-201ENSMUST00000141559 1332 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm43773-201ENSMUST00000198548 2162 ntBASIC13.13□□□□□ -0.31
Hmgb1P63158 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm15370-201ENSMUST00000117158 253 ntBASIC13.13□□□□□ -0.31
Hmgb1P63158 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm12164-201ENSMUST00000121695 551 ntBASIC13.13□□□□□ -0.31
Hmgb1P63158 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb1P63158 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm18054-201ENSMUST00000207539 555 ntBASIC13.13□□□□□ -0.31
Hmgb1P63158 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC13.13□□□□□ -0.31
Hmgb1P63158 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Hmgb1P63158 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Hmgb1P63158 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Rgr-203ENSMUST00000225070 4704 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 Gm45635-201ENSMUST00000211516 2134 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 AC131068.2-201ENSMUST00000226175 1453 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 M1ap-201ENSMUST00000113980 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Gm42571-201ENSMUST00000201197 2464 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Hmgb1P63158 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Cir1-201ENSMUST00000058615 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Hmgb1P63158 Gm14441-201ENSMUST00000121960 540 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 Gm15547-201ENSMUST00000122152 333 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 Gm8062-201ENSMUST00000139696 444 ntBASIC13.12□□□□□ -0.31
Hmgb1P63158 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms