Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Olfr1156-202ENSMUST00000216191 3300 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Cux1P53564 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Cux1P53564 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Gm11502-201ENSMUST00000120917 1211 ntBASIC18.01■□□□□ 0.47
Cux1P53564 Gm5257-201ENSMUST00000121823 790 ntBASIC18.01■□□□□ 0.47
Cux1P53564 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Cux1P53564 Gm16030-201ENSMUST00000159098 603 ntBASIC18.01■□□□□ 0.47
Cux1P53564 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Cux1P53564 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Gm34379-201ENSMUST00000195036 290 ntBASIC18.01■□□□□ 0.47
Cux1P53564 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cux1P53564 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Cux1P53564 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Cux1P53564 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Gm22146-201ENSMUST00000157397 288 ntBASIC18■□□□□ 0.47
Cux1P53564 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC18■□□□□ 0.47
Cux1P53564 Gm44647-201ENSMUST00000207402 428 ntBASIC18■□□□□ 0.47
Cux1P53564 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC18■□□□□ 0.47
Cux1P53564 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC18■□□□□ 0.47
Cux1P53564 CT030170.2-201ENSMUST00000223267 126 ntBASIC18■□□□□ 0.47
Cux1P53564 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
Cux1P53564 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Cux1P53564 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cux1P53564 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Cux1P53564 Gm12389-201ENSMUST00000117696 418 ntBASIC17.99■□□□□ 0.47
Cux1P53564 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC17.99■□□□□ 0.47
Cux1P53564 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC17.99■□□□□ 0.47
Cux1P53564 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC17.99■□□□□ 0.47
Cux1P53564 Gm6855-201ENSMUST00000206307 790 ntBASIC17.99■□□□□ 0.47
Cux1P53564 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC17.99■□□□□ 0.47
Cux1P53564 AC153962.2-201ENSMUST00000219417 550 ntBASIC17.99■□□□□ 0.47
Cux1P53564 AC154361.2-201ENSMUST00000224747 943 ntBASIC17.99■□□□□ 0.47
Cux1P53564 Gm8181-201ENSMUST00000062242 669 ntBASIC17.99■□□□□ 0.47
Cux1P53564 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Cux1P53564 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC17.99■□□□□ 0.47
Cux1P53564 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC17.99■□□□□ 0.47
Cux1P53564 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Gm7841-201ENSMUST00000122108 1629 ntBASIC17.99■□□□□ 0.47
Cux1P53564 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cux1P53564 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Gm43463-201ENSMUST00000195967 1803 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC17.98■□□□□ 0.47
Cux1P53564 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC17.98■□□□□ 0.47
Cux1P53564 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Cux1P53564 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Smok4a-201ENSMUST00000074512 1455 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC17.98■□□□□ 0.47
Cux1P53564 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC17.98■□□□□ 0.47
Cux1P53564 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cux1P53564 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms