Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
Lire1P11260 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Lire1P11260 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.41□□□□□ -0.58
Lire1P11260 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Lire1P11260 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.4□□□□□ -0.58
Lire1P11260 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC11.4□□□□□ -0.58
Lire1P11260 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Lire1P11260 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Lire1P11260 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.4□□□□□ -0.58
Lire1P11260 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Gm28693-202ENSMUST00000190758 331 ntBASIC11.4□□□□□ -0.58
Lire1P11260 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.4□□□□□ -0.58
Lire1P11260 Gm37042-201ENSMUST00000193816 581 ntBASIC11.4□□□□□ -0.58
Lire1P11260 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Lire1P11260 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.4□□□□□ -0.58
Lire1P11260 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.4□□□□□ -0.58
Lire1P11260 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.4□□□□□ -0.58
Lire1P11260 Nsd1-205ENSMUST00000224693 852 ntBASIC11.4□□□□□ -0.58
Lire1P11260 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.4□□□□□ -0.58
Lire1P11260 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Gm26660-202ENSMUST00000223620 4112 ntBASIC11.4□□□□□ -0.58
Lire1P11260 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.4□□□□□ -0.58
Lire1P11260 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.4□□□□□ -0.58
Lire1P11260 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Lire1P11260 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Lire1P11260 Cd8a-201ENSMUST00000066747 3128 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Lire1P11260 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC11.4□□□□□ -0.59
Lire1P11260 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Lire1P11260 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.4□□□□□ -0.59
Lire1P11260 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Gm45677-201ENSMUST00000209975 1341 ntBASIC11.39□□□□□ -0.59
Lire1P11260 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.39□□□□□ -0.59
Lire1P11260 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.39□□□□□ -0.59
Lire1P11260 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC11.39□□□□□ -0.59
Lire1P11260 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Mir3547-201ENSMUST00000175461 88 ntBASIC11.39□□□□□ -0.59
Lire1P11260 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.39□□□□□ -0.59
Lire1P11260 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC11.39□□□□□ -0.59
Lire1P11260 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Prr30-201ENSMUST00000057718 1862 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
Lire1P11260 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Gm43817-201ENSMUST00000196459 2262 ntBASIC11.39□□□□□ -0.59
Lire1P11260 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 86.5 ms