Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm14481-201ENSMUST00000117178 629 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm14028-201ENSMUST00000117434 479 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm15879-202ENSMUST00000150906 565 ntTSL 2 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm16147-201ENSMUST00000162143 373 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Ipcef1-209ENSMUST00000170680 1174 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Mir3102-201ENSMUST00000175555 104 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm16505-201ENSMUST00000179981 232 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm29516-201ENSMUST00000190402 468 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm29664-201ENSMUST00000191125 463 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm42619-201ENSMUST00000197564 1136 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm17812-201ENSMUST00000204935 318 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm45433-201ENSMUST00000209386 247 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm8913-201ENSMUST00000209491 641 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm7619-201ENSMUST00000210649 1282 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 AC154252.2-201ENSMUST00000223593 767 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Vmn1r16-201ENSMUST00000227168 912 ntAPPRIS P2 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Tmem212-201ENSMUST00000058077 716 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Olfr1180-201ENSMUST00000099824 1063 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 AC241621.2-201ENSMUST00000223991 2151 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Tspan8-203ENSMUST00000179196 1381 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Pck2-205ENSMUST00000226352 2784 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm37785-201ENSMUST00000195783 2408 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Ifna13-201ENSMUST00000105149 819 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm14833-201ENSMUST00000118345 1027 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm14208-201ENSMUST00000119645 678 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm11835-201ENSMUST00000120635 663 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm22985-201ENSMUST00000122754 116 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC9.49□□□□□ -0.89
Hoxd3P09027 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Vmn1r5-201ENSMUST00000164307 1056 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm3573-201ENSMUST00000168673 898 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm3486-201ENSMUST00000169361 883 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm4181-201ENSMUST00000170249 898 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm18348-201ENSMUST00000191227 820 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm37355-201ENSMUST00000193345 606 ntBASIC9.49□□□□□ -0.89
Hoxd3P09027 Gm9931-201ENSMUST00000193584 1185 ntBASIC9.49□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 69.5 ms