Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm15276-201ENSMUST00000145953 498 ntBASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.26□□□□□ -0.61
Trim3Q9R1R2 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm15236-201ENSMUST00000117309 379 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm44958-201ENSMUST00000203734 736 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm10312-201ENSMUST00000078515 489 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Trim3Q9R1R2 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 AC154639.1-201ENSMUST00000224393 2849 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm4819-201ENSMUST00000182170 1009 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm4034-201ENSMUST00000187674 480 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm44967-201ENSMUST00000207047 631 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 AC166344.1-202ENSMUST00000224139 234 ntBASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms