Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm18056-201ENSMUST00000207670 568 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm18061-201ENSMUST00000208350 562 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm18063-201ENSMUST00000208529 568 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm18052-201ENSMUST00000208750 559 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm4157-201ENSMUST00000211647 679 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm9797-202ENSMUST00000218003 294 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gm5846-201ENSMUST00000193146 1414 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Arhgef3-204ENSMUST00000225949 3198 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm9072-201ENSMUST00000218390 1514 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm43760-201ENSMUST00000202120 3015 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm11660-201ENSMUST00000120955 412 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm8343-201ENSMUST00000182705 994 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm27530-201ENSMUST00000184096 98 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm43184-201ENSMUST00000197247 542 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 CT573034.1-201ENSMUST00000222983 313 ntBASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Brf1Q8CFK2 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Gm18038-201ENSMUST00000197900 485 ntBASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Gm18212-201ENSMUST00000211678 889 ntBASIC14.35□□□□□ -0.11
Brf1Q8CFK2 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Gm270-201ENSMUST00000223010 976 ntBASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Brf1Q8CFK2 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms