Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm4986-201ENSMUST00000119731 549 ntBASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Gm9823-201ENSMUST00000051212 327 ntBASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ccdc40Q8BI79 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm13392-201ENSMUST00000117708 150 ntBASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm7619-201ENSMUST00000210649 1282 ntBASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Dhrs4-202ENSMUST00000226168 828 ntBASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm13142-201ENSMUST00000117213 1453 ntBASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 AC167669.2-201ENSMUST00000224417 1620 ntBASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ccdc40Q8BI79 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Gm13297-201ENSMUST00000120205 934 ntBASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Gm14832-201ENSMUST00000121289 322 ntBASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Gm5950-201ENSMUST00000213337 772 ntBASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Ccdc40Q8BI79 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms