Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx1P48377 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC14.23□□□□□ -0.13
Rfx1P48377 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rfx1P48377 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Rfx1P48377 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.22□□□□□ -0.13
Rfx1P48377 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Gm12940-202ENSMUST00000137236 1970 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Gm18986-201ENSMUST00000216029 1986 ntBASIC14.22□□□□□ -0.13
Rfx1P48377 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Rfx1P48377 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.22□□□□□ -0.13
Rfx1P48377 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.22□□□□□ -0.13
Rfx1P48377 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Rfx1P48377 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC14.22□□□□□ -0.13
Rfx1P48377 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Gm29151-201ENSMUST00000196669 2513 ntTSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC14.22□□□□□ -0.13
Rfx1P48377 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rfx1P48377 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Rfx1P48377 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Rfx1P48377 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.21□□□□□ -0.13
Rfx1P48377 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.21□□□□□ -0.13
Rfx1P48377 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Gm27023-201ENSMUST00000182372 285 ntBASIC14.21□□□□□ -0.13
Rfx1P48377 Gm18558-201ENSMUST00000186253 1214 ntBASIC14.21□□□□□ -0.13
Rfx1P48377 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Rfx1P48377 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC14.21□□□□□ -0.13
Rfx1P48377 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Rfx1P48377 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Rfx1P48377 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC14.21□□□□□ -0.13
Rfx1P48377 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 AC154671.1-201ENSMUST00000228617 1578 ntBASIC14.21□□□□□ -0.14
Rfx1P48377 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Rfx1P48377 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC14.2□□□□□ -0.14
Rfx1P48377 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Gm14247-201ENSMUST00000120950 237 ntBASIC14.2□□□□□ -0.14
Rfx1P48377 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Rfx1P48377 Gm37201-201ENSMUST00000191845 523 ntBASIC14.2□□□□□ -0.14
Rfx1P48377 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.2□□□□□ -0.14
Rfx1P48377 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Rfx1P48377 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC14.2□□□□□ -0.14
Rfx1P48377 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Rfx1P48377 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rfx1P48377 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms