Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
RaraP11416 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
RaraP11416 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.88□□□□□ -0.35
RaraP11416 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
RaraP11416 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
RaraP11416 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
RaraP11416 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.87□□□□□ -0.35
RaraP11416 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RaraP11416 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
RaraP11416 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
RaraP11416 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Gm8062-201ENSMUST00000139696 444 ntBASIC12.87□□□□□ -0.35
RaraP11416 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
RaraP11416 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
RaraP11416 Gm37319-201ENSMUST00000193500 636 ntBASIC12.87□□□□□ -0.35
RaraP11416 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
RaraP11416 Gm18062-201ENSMUST00000208020 547 ntBASIC12.87□□□□□ -0.35
RaraP11416 Gm18055-201ENSMUST00000208254 547 ntBASIC12.87□□□□□ -0.35
RaraP11416 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.87□□□□□ -0.35
RaraP11416 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RaraP11416 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RaraP11416 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
RaraP11416 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.87□□□□□ -0.35
RaraP11416 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.87□□□□□ -0.35
RaraP11416 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
RaraP11416 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
RaraP11416 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
RaraP11416 Gm43242-201ENSMUST00000199507 1776 ntBASIC12.86□□□□□ -0.35
RaraP11416 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
RaraP11416 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 Gm12015-201ENSMUST00000117065 843 ntBASIC12.86□□□□□ -0.35
RaraP11416 Gm11989-201ENSMUST00000117240 672 ntBASIC12.86□□□□□ -0.35
RaraP11416 Gm12957-201ENSMUST00000117835 377 ntBASIC12.86□□□□□ -0.35
RaraP11416 Gm11362-201ENSMUST00000118838 850 ntBASIC12.86□□□□□ -0.35
RaraP11416 4930412F09Rik-201ENSMUST00000139006 1017 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.86□□□□□ -0.35
RaraP11416 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC12.86□□□□□ -0.35
RaraP11416 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC12.86□□□□□ -0.35
RaraP11416 Gm26956-201ENSMUST00000182176 986 ntBASIC12.86□□□□□ -0.35
RaraP11416 Gm27572-201ENSMUST00000183702 255 ntBASIC12.86□□□□□ -0.35
RaraP11416 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 Gm30285-201ENSMUST00000214614 422 ntBASIC12.86□□□□□ -0.35
RaraP11416 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
RaraP11416 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
RaraP11416 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
RaraP11416 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.86□□□□□ -0.35
RaraP11416 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.86□□□□□ -0.35
RaraP11416 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC12.86□□□□□ -0.35
RaraP11416 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 75.7 ms