Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Cdc40Q9DC48 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm13142-201ENSMUST00000117213 1453 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm18626-201ENSMUST00000221512 1409 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm24749-201ENSMUST00000157838 343 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Mir3547-201ENSMUST00000175461 88 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm45598-202ENSMUST00000210719 986 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 AC166574.4-201ENSMUST00000227165 1937 ntBASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC11.13□□□□□ -0.63
Cdc40Q9DC48 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm27627-201ENSMUST00000183644 150 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm29615-201ENSMUST00000185371 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28224-201ENSMUST00000186078 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm29001-201ENSMUST00000186177 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28292-201ENSMUST00000186593 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28101-201ENSMUST00000187608 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm29076-201ENSMUST00000187689 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28302-201ENSMUST00000187931 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28646-201ENSMUST00000188220 697 ntBASIC11.12□□□□□ -0.63
Cdc40Q9DC48 Gm28205-201ENSMUST00000189177 697 ntBASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 73.6 ms