Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Gm45199-201ENSMUST00000207640 1507 ntBASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp40Q8BWR4 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Gm42657-201ENSMUST00000201746 211 ntBASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Gm43852-201ENSMUST00000202098 917 ntBASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 AC165260.2-203ENSMUST00000224237 336 ntBASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Gm1840-201ENSMUST00000051687 1432 ntBASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp40Q8BWR4 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm36970-201ENSMUST00000193688 1859 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm13384-201ENSMUST00000117166 1344 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm14942-201ENSMUST00000119642 336 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Mir1956-201ENSMUST00000157748 65 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Mir8093-201ENSMUST00000185043 137 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm37905-201ENSMUST00000195310 341 ntBASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Usp40Q8BWR4 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm13347-201ENSMUST00000120298 1353 ntBASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm12516-201ENSMUST00000120819 385 ntBASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Usp40Q8BWR4 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC16.3■□□□□ 0.2
Usp40Q8BWR4 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms