Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Ift88Q61371 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC13.19□□□□□ -0.3
Ift88Q61371 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC13.19□□□□□ -0.3
Ift88Q61371 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.19□□□□□ -0.3
Ift88Q61371 Gm38158-201ENSMUST00000194617 339 ntBASIC13.19□□□□□ -0.3
Ift88Q61371 Gm42627-201ENSMUST00000197347 224 ntBASIC13.19□□□□□ -0.3
Ift88Q61371 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.19□□□□□ -0.3
Ift88Q61371 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Ift88Q61371 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC13.19□□□□□ -0.3
Ift88Q61371 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Gm38187-201ENSMUST00000195609 4709 ntBASIC13.19□□□□□ -0.3
Ift88Q61371 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Ift88Q61371 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Gm8146-201ENSMUST00000192106 1847 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
Ift88Q61371 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Ift88Q61371 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Ift88Q61371 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Gm12164-201ENSMUST00000121695 551 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Gm11424-201ENSMUST00000121929 829 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.18□□□□□ -0.3
Ift88Q61371 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Gm5850-201ENSMUST00000192923 1206 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC13.18□□□□□ -0.3
Ift88Q61371 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Ift88Q61371 Rgr-203ENSMUST00000225070 4704 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC13.18□□□□□ -0.3
Ift88Q61371 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC13.18□□□□□ -0.3
Ift88Q61371 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC13.18□□□□□ -0.3
Ift88Q61371 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ift88Q61371 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
Ift88Q61371 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm45677-201ENSMUST00000209975 1341 ntBASIC13.17□□□□□ -0.3
Ift88Q61371 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.17□□□□□ -0.3
Ift88Q61371 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Ift88Q61371 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ift88Q61371 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm5419-201ENSMUST00000119301 527 ntBASIC13.17□□□□□ -0.3
Ift88Q61371 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC13.17□□□□□ -0.3
Ift88Q61371 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.17□□□□□ -0.3
Ift88Q61371 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Mospd4-201ENSMUST00000180618 576 ntBASIC13.17□□□□□ -0.3
Ift88Q61371 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm5370-201ENSMUST00000187187 574 ntBASIC13.17□□□□□ -0.3
Ift88Q61371 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm5950-201ENSMUST00000213337 772 ntBASIC13.17□□□□□ -0.3
Ift88Q61371 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC13.17□□□□□ -0.3
Ift88Q61371 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms