Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm15610-201ENSMUST00000120584 195 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Gm7150-201ENSMUST00000122032 981 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC10.9□□□□□ -0.66
Usf1Q61069 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm3017-201ENSMUST00000203603 1126 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Gm6108-201ENSMUST00000208365 367 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC10.9□□□□□ -0.66
Usf1Q61069 CT030653.1-201ENSMUST00000224382 1279 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Usf1Q61069 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC10.9□□□□□ -0.67
Usf1Q61069 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC10.9□□□□□ -0.67
Usf1Q61069 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Usf1Q61069 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm37795-201ENSMUST00000194216 2459 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm25766-201ENSMUST00000104101 131 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC10.89□□□□□ -0.67
Usf1Q61069 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm4862-201ENSMUST00000170405 438 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm17798-201ENSMUST00000182282 1035 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 Mir6407-201ENSMUST00000184510 101 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Usf1Q61069 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm37981-201ENSMUST00000194280 535 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm5805-201ENSMUST00000072779 456 ntBASIC10.89□□□□□ -0.67
Usf1Q61069 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
Usf1Q61069 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Usf1Q61069 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Usf1Q61069 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Usf1Q61069 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Usf1Q61069 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm45643-201ENSMUST00000211364 1484 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm43807-201ENSMUST00000200678 1781 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm6210-201ENSMUST00000204734 1942 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Usf1Q61069 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Usf1Q61069 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC10.88□□□□□ -0.67
Usf1Q61069 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm26134-201ENSMUST00000178484 110 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Gm9135-201ENSMUST00000182963 990 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Gm37131-201ENSMUST00000192502 1561 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Gm18463-201ENSMUST00000207258 474 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Gm8342-201ENSMUST00000209839 757 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 AC151895.1-201ENSMUST00000219025 1742 ntBASIC10.88□□□□□ -0.67
Usf1Q61069 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC10.88□□□□□ -0.67
Usf1Q61069 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Usf1Q61069 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Usf1Q61069 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Usf1Q61069 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms