Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm11814-201ENSMUST00000119515 929 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm13315-201ENSMUST00000120376 991 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm27892-201ENSMUST00000185017 106 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gtpbp10-211ENSMUST00000198799 648 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm10012-201ENSMUST00000078252 192 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gm26232-201ENSMUST00000083360 166 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim40Q3UWA4 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Gm12960-201ENSMUST00000120017 1066 ntBASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Gm22331-201ENSMUST00000158066 136 ntBASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Gm9002-201ENSMUST00000178437 499 ntBASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Gm27486-201ENSMUST00000184923 80 ntBASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 AC153929.1-201ENSMUST00000219009 303 ntBASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.19□□□□□ -0.62
Trim40Q3UWA4 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gm13050-201ENSMUST00000122149 1345 ntBASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gm44958-201ENSMUST00000203734 736 ntBASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC11.18□□□□□ -0.62
Trim40Q3UWA4 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms