Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm7537-201ENSMUST00000221660 1414 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm44094-201ENSMUST00000204703 2030 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm13916-201ENSMUST00000117368 628 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm8737-201ENSMUST00000122208 642 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Rprl1-201ENSMUST00000158050 327 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm15744-201ENSMUST00000161734 213 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm17798-201ENSMUST00000182282 1035 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm8343-201ENSMUST00000182705 994 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm9797-202ENSMUST00000218003 294 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 CT009536.2-201ENSMUST00000225370 665 ntBASIC10.23□□□□□ -0.77
Col8a1Q00780 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Col8a1Q00780 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col8a1Q00780 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC10.22□□□□□ -0.77
Col8a1Q00780 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm25076-201ENSMUST00000104098 132 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Mir874-201ENSMUST00000104769 76 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm13328-201ENSMUST00000120816 1020 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm12783-201ENSMUST00000121425 397 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm24398-201ENSMUST00000157870 109 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm38228-201ENSMUST00000193169 1293 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm42629-201ENSMUST00000199063 1102 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 AC154257.1-202ENSMUST00000224729 843 ntBASIC10.22□□□□□ -0.77
Col8a1Q00780 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col8a1Q00780 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Col8a1Q00780 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms