Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gm8862-201ENSMUST00000198379 1346 ntBASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trim3Q9R1R2 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm18262-201ENSMUST00000222560 1946 ntBASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm8712-201ENSMUST00000221090 701 ntBASIC11.31□□□□□ -0.6
Trim3Q9R1R2 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm43622-201ENSMUST00000200140 2019 ntBASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Gm4864-201ENSMUST00000219894 1461 ntBASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trim3Q9R1R2 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Mir877-201ENSMUST00000104738 85 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm23119-201ENSMUST00000158610 140 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm3096-201ENSMUST00000185770 364 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm8885-201ENSMUST00000189382 598 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms