Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Lima1Q9ERG0 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.83□□□□□ -0.51
Lima1Q9ERG0 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
Lima1Q9ERG0 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Lima1Q9ERG0 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm11597-201ENSMUST00000121423 964 ntBASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm8018-201ENSMUST00000173536 789 ntBASIC11.83□□□□□ -0.52
Lima1Q9ERG0 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC11.83□□□□□ -0.52
Lima1Q9ERG0 Gm40377-201ENSMUST00000204604 2015 ntBASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Gm5904-201ENSMUST00000210286 865 ntBASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Gm22058-201ENSMUST00000083393 310 ntBASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lima1Q9ERG0 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lima1Q9ERG0 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms