Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm42937-201ENSMUST00000197360 752 ntBASIC11.7□□□□□ -0.54
Msh4Q99MT2 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.7□□□□□ -0.54
Msh4Q99MT2 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 CT573034.1-201ENSMUST00000222983 313 ntBASIC11.7□□□□□ -0.54
Msh4Q99MT2 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Msh4Q99MT2 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.69□□□□□ -0.54
Msh4Q99MT2 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.69□□□□□ -0.54
Msh4Q99MT2 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm13665-201ENSMUST00000120830 528 ntBASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm2383-201ENSMUST00000181461 807 ntBASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC11.69□□□□□ -0.54
Msh4Q99MT2 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Msh4Q99MT2 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm29199-201ENSMUST00000187766 775 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Mir433-201ENSMUST00000093564 124 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.68□□□□□ -0.54
Msh4Q99MT2 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Msh4Q99MT2 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms