Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Col8a1Q00780 Gm45706-201ENSMUST00000213063 2136 ntBASIC10.28□□□□□ -0.76
Col8a1Q00780 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC10.28□□□□□ -0.76
Col8a1Q00780 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC10.28□□□□□ -0.76
Col8a1Q00780 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Col8a1Q00780 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Col8a1Q00780 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Col8a1Q00780 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Col8a1Q00780 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm44414-201ENSMUST00000203660 2109 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 AC154725.1-201ENSMUST00000224826 1961 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm24934-201ENSMUST00000103764 111 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm13549-201ENSMUST00000118339 796 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm15566-201ENSMUST00000121130 590 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm13022-201ENSMUST00000121181 285 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm25604-201ENSMUST00000158359 133 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm19087-201ENSMUST00000191430 946 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm45594-201ENSMUST00000211717 241 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC10.27□□□□□ -0.77
Col8a1Q00780 CT025553.1-201ENSMUST00000226292 299 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Gm5939-201ENSMUST00000119613 2874 ntBASIC10.27□□□□□ -0.77
Col8a1Q00780 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Col8a1Q00780 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Col8a1Q00780 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm45342-201ENSMUST00000210903 1363 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm37859-201ENSMUST00000195529 2173 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm11470-201ENSMUST00000118868 1475 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 n-R5s64-201ENSMUST00000102019 119 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm9022-201ENSMUST00000182482 992 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm8531-201ENSMUST00000188319 893 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm18204-201ENSMUST00000209835 793 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 CT571245.2-201ENSMUST00000218421 305 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 CT030653.1-201ENSMUST00000224382 1279 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC10.26□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms