Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Msx1P13297 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm4864-201ENSMUST00000219894 1461 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Gm44292-201ENSMUST00000205194 2364 ntBASIC11.62□□□□□ -0.55
Msx1P13297 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
Msx1P13297 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Msx1P13297 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.61□□□□□ -0.55
Msx1P13297 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 Gm43823-201ENSMUST00000197391 1808 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Msx1P13297 Csn1s2b-203ENSMUST00000113279 745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Gm12266-201ENSMUST00000120311 962 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Rmrp-201ENSMUST00000157463 271 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm17040-202ENSMUST00000170597 889 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Vmn1r23-201ENSMUST00000175817 997 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Msx1P13297 Gm9499-201ENSMUST00000180888 964 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm27552-201ENSMUST00000183351 62 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm27844-201ENSMUST00000183613 62 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC11.61□□□□□ -0.55
Msx1P13297 1700122D07Rik-201ENSMUST00000186973 421 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Gm29538-201ENSMUST00000190783 471 ntTSL 2 BASIC11.61□□□□□ -0.55
Msx1P13297 Gm32999-201ENSMUST00000192693 562 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Rprl1-202ENSMUST00000198476 238 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm43550-201ENSMUST00000200597 303 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm42734-201ENSMUST00000201656 878 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC11.61□□□□□ -0.55
Msx1P13297 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Gm45770-201ENSMUST00000212105 616 ntBASIC11.61□□□□□ -0.55
Msx1P13297 D9Wsu149-201ENSMUST00000214169 594 ntBASIC11.61□□□□□ -0.55
Msx1P13297 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC11.61□□□□□ -0.55
Msx1P13297 Hesx1-202ENSMUST00000224331 983 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Msx1P13297 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.61□□□□□ -0.55
Msx1P13297 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Csn1s2b-201ENSMUST00000072539 810 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Olfr547-201ENSMUST00000098229 936 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Msx1P13297 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Gm37391-201ENSMUST00000194891 2318 ntBASIC11.61□□□□□ -0.55
Msx1P13297 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Msx1P13297 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Msx1P13297 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Msx1P13297 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Msx1P13297 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Gm20633-201ENSMUST00000176742 2831 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Msx1P13297 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.6□□□□□ -0.55
Msx1P13297 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC11.6□□□□□ -0.55
Msx1P13297 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Msx1P13297 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC11.6□□□□□ -0.55
Msx1P13297 Gm14603-201ENSMUST00000121275 448 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC11.6□□□□□ -0.55
Msx1P13297 Vmn1r224-201ENSMUST00000170076 897 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Msx1P13297 Fabp12-204ENSMUST00000172126 779 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Gm20407-201ENSMUST00000172891 598 ntTSL 3 BASIC11.6□□□□□ -0.55
Msx1P13297 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Msx1P13297 Gm44061-201ENSMUST00000203962 1195 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.6□□□□□ -0.55
Msx1P13297 Gm6562-201ENSMUST00000221903 464 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Spcs1-203ENSMUST00000226374 592 ntBASIC11.6□□□□□ -0.55
Msx1P13297 AC108416.1-202ENSMUST00000228927 1201 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Gm10312-201ENSMUST00000078515 489 ntBASIC11.6□□□□□ -0.55
Msx1P13297 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Msx1P13297 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Msx1P13297 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC11.6□□□□□ -0.55
Msx1P13297 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms