Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim40Q3UWA4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim40Q3UWA4 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim40Q3UWA4 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim40Q3UWA4 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim40Q3UWA4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim40Q3UWA4 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim40Q3UWA4 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim40Q3UWA4 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim40Q3UWA4 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim40Q3UWA4 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Trim40Q3UWA4 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim40Q3UWA4 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.27■□□□□ 0.67
Trim40Q3UWA4 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim40Q3UWA4 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms