Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Pkd1l2-202ENSMUST00000109093 7389 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Col12a1-201ENSMUST00000071750 11511 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm6992-201ENSMUST00000217973 1607 ntBASIC9.92□□□□□ -0.82
Hmgb3O54879 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Gm9361-201ENSMUST00000198695 1507 ntBASIC9.92□□□□□ -0.82
Hmgb3O54879 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
Hmgb3O54879 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC9.91□□□□□ -0.82
Hmgb3O54879 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC9.91□□□□□ -0.82
Hmgb3O54879 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Ldha-ps-201ENSMUST00000119390 995 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC9.91□□□□□ -0.82
Hmgb3O54879 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC9.91□□□□□ -0.82
Hmgb3O54879 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm17208-201ENSMUST00000168388 535 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm6652-201ENSMUST00000186414 1070 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Nvl-201ENSMUST00000027797 9392 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Hmgb3O54879 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 AC122811.1-201ENSMUST00000222257 2921 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Slc4a10-201ENSMUST00000054484 5320 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm45776-201ENSMUST00000212366 1522 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Adam22-202ENSMUST00000050166 8969 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
Hmgb3O54879 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 AL645783.1-201ENSMUST00000221416 1832 ntBASIC9.91□□□□□ -0.82
Hmgb3O54879 Il9r-205ENSMUST00000145401 4482 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Hmgb3O54879 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Vipr2-201ENSMUST00000011315 3383 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Hmgb3O54879 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm36987-201ENSMUST00000194704 2979 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Hmgb3O54879 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Hmgb3O54879 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC9.9□□□□□ -0.82
Hmgb3O54879 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm11618-201ENSMUST00000117946 267 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC9.9□□□□□ -0.82
Hmgb3O54879 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC9.9□□□□□ -0.82
Hmgb3O54879 Mir7684-201ENSMUST00000183858 60 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 Mir8102-201ENSMUST00000184148 139 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm6218-201ENSMUST00000219812 628 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 AC134254.1-201ENSMUST00000221362 167 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 Gm19220-201ENSMUST00000222682 803 ntBASIC9.9□□□□□ -0.82
Hmgb3O54879 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Phf21a-202ENSMUST00000068702 6023 ntAPPRIS P3 TSL 5 BASIC9.9□□□□□ -0.82
Hmgb3O54879 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC9.9□□□□□ -0.82
Hmgb3O54879 Tfap2b-201ENSMUST00000027059 5863 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Hmgb3O54879 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 317 ms